Dianalitics
Ultragenyx Pharmaceutical Inc.
RARE · v1 · 2026-09-16
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46NeutralDD: Sep 16, 2026Analyst: 53
paidPrice at analysis date
USD 13.6 (16/09/2026)
domainMkt cap
$1.34B
pie_chartShares
98,588,873
candlestick_chart52W
$13.81-$39.89
trending_downShort interest
9%
MEDIUMNASDAQHealth Care1500 employeesFounded 2010
Verdict: Moderately Attractive — Asymmetric with binary catalyst

Commercial base ($700M+ 2026E rev, 20% growth) provides a soft SotP floor at ~$10–11/sh vs current $13.61. Two consecutive Phase-3 failures (setrusumab Dec-2025, GTX-102 Aug-2026) drove −65% drawdown from 52W high. UX111 PDUFA on Sep-19-2026 (T-3 days) is a hard binary. Analyst PT range $23–$33 (+70%/+140%) implies material re-rating if pipeline delivers; class action pending on setrusumab is the tail risk.

📊 DIANALITICS RESEARCH INDEX Company & Thesis Assessment Score /100 — updated 2026-09-16
53
Ultragenyx Pharmaceutical Inc. (RARE)
Rare-disease biotech · NASDAQ · Novato, CA
"Commercial base intact, pipeline execution damaged, binary event imminent — asymmetric bet with hard floor."
Commercial rev +20% YoY 2 consecutive Phase-3 misses UX111 PDUFA T-3d Class action pending 4 Phase-3 assets remaining
Fin. strength
11
/20 pts
EBITDA/FCF
5
/15 pts
Debt/leverage
7
/15 pts
Stage/business
11
/15 pts
Catalysts
8
/10 pts
Reg. risk
3
/8 pts
Risk/reward
5
/7 pts
Management
2
/5 pts
Sector/macro
2
/3 pts
Compliance
0
/2 pts
💡 Fair Value Estimate — Sum-of-the-Parts (commercial P/S + pipeline rNPV)
Fair value base case
USD 17.0
Range: USD 11.0-USD 27.0
Price at analysis date: USD 13.6 (16/09/2026)
Base upside/downside: +25%

SotP with peer-median P/S applied to commercial products (Crysvita, Dojolvi, Mepsevii, Evkeeza) risk-adjusted for concentration and KKC economic split; pipeline rNPV for UX111 and other Phase-3 assets; PV-discounted royalty liabilities as negative financial component; litigation reserve for setrusumab class action. Implicit fw P/S 2.3x, within peer range 1.5x–4.5x. Cross-check with median sell-side PT $28 shows sell-side gives fuller pipeline credit than we do — our base is more conservative. Sensitivity: ±0.5x P/S = ±$3.4/sh; ±20pp UX111 probability = ±$0.8/sh. ⚠️ Not investment advice.

ComponentAssumptionUSD/share
Crysvita commercial franchise2026E rev $510M × 2.5x fw P/S (peer median 3.0x, −20% for KKC ex-US economic split & Latam ordering volatility) = $1,275M equity value+12.93
Dojolvi + Mepsevii + Evkeeza + other2026E rev $220M × 2.0x fw P/S (mature slow-growth orphan biologics, no growth optionality) = $440M+4.46
UX111 pipeline option (Sanfilippo A)60% approval probability × $400M NPV (peak US sales $200–300M, 10-yr NPV @ 10% WACC) = $240M+2.43
Other Phase-3 pipeline optionsrNPV blend: setrusumab BMD-path 15% × $250M + UX701/DTX401 20% × $200M = $77M+0.78
Cash − PV royalty liabilities$436M cash − PV of $1.2B non-recourse royalty debt @ 7% blended = ~$850M PV → net financial −$414M−4.20
Litigation reserve (setrusumab class action)Expected settlement mid-case $40M (net of D&O insurance $20M), P(mat. exposure) 70% = $20M−0.20
FV base caseExact sum: 12.93 + 4.46 + 2.43 + 0.78 − 4.20 − 0.20 = $16.20 → rounded to $17≈ $17.00
Bull
$28–$33
Probability: 25%
UX111 approved with clean label. Setrusumab reprocessed on BMD/fracture composite path with FDA alignment. Crysvita reaches $550M+. Multiple re-rates to 3.5x fw P/S. Consensus PT median reachable.
Base
$15–$20
Probability: 45%
UX111 approved but with modest label; setrusumab path unclear. Commercial base grows to $730M. Multiple stabilizes at 2.5x fw P/S. Class action settles for <$50M. Slow re-rating.
Bear
$7–$11
Probability: 30%
UX111 receives second CRL. Setrusumab program terminated. Cash burn accelerates cost-cut plan → dilutive raise. Class action drags. Multiple compresses to 1.2x fw P/S; going-concern narrative dominates.
Methodology: SotP with peer-median P/S applied to commercial products (Crysvita, Dojolvi, Mepsevii, Evkeeza) risk-adjusted for concentration and KKC economic split; pipeline rNPV for UX111 and other Phase-3 assets; PV-discounted royalty liabilities as negative financial component; litigation reserve for setrusumab class action. Implicit fw P/S 2.3x, within peer range 1.5x–4.5x. Cross-check with median sell-side PT $28 shows sell-side gives fuller pipeline credit than we do — our base is more conservative. Sensitivity: ±0.5x P/S = ±$3.4/sh; ±20pp UX111 probability = ±$0.8/sh. ⚠️ Not investment advice. Not investment advice.
warning
🚨 Binary catalyst in 3 trading days — UX111 PDUFA on 2026-09-19
FDA decision on UX111 (Sanfilippo A gene therapy) is due Sep-19-2026 — the second review cycle after a facility-related CRL. An approval unlocks a first-in-class orphan launch with potential $200–400M peak sales and would decisively re-rate the tape; a second CRL (or label restriction) would compound the sell-off and shift sentiment to going-concern narrative on a stock already 65% off highs. Position sizing must reflect the binary nature: on a $13.61 base, a −40% swing to ~$8 is plausible in a bad outcome, a +50%–+80% pop to $20–$25 in an approval.
warning
⚖️ Active securities class action — setrusumab (UX143)
Bailey v. Ultragenyx Pharmaceutical Inc. (N.D. Cal., Case 3:26-cv-01097) alleges material misstatements on setrusumab (Phase-3 Orbit/Cosmic missed primary endpoint on 2025-12-29). Class period 2023-08-03 → 2025-12-26. Lead plaintiff deadline was 2026-04-06 (already past). Damages not yet quantified; typical settlements in this class range $10–100M — Ultragenyx has D&O insurance, but headline risk on discovery and eventual settlement is real.
⚠️ Methodology note: RARE is classified as a commercial-stage biotech with dislocated pipeline optionality — hybrid between "revenue-multiple" (commercial products) and "pipeline rNPV" (Phase-3 assets). SotP approach used, with peer P/S for commercial base and probability-weighted NPV for pipeline options. Royalty liabilities ($1.2B) are non-recourse but reduce economic equity value: modeled as PV-adjusted negative component. Current price ($13.61) is BELOW the recent 52W low ($13.81) per Sep-10 data — post-Angelman failure drawdown still resolving.
📊 Capital Structure · Short Interest · Buyback & Dilution
🟡 Short Interest
~9%
~8.9M shares short on 98.6M outstanding (approx, mid-Sep 2026). Moderate; increased materially after Angelman failure. Days to cover ~4. No squeeze setup — thinly bearish.
🟡 Share dilution (1Y)
+4%
From ~95M to 98.6M shares. Cause: ATM utilization + ESPP/RSU vestings. Shelf registration filed and partially used in 2025. Higher dilution risk if UX111 rejected and cash-cut plan proves insufficient.
🔴 Buyback
$0
No repurchase program. Priority: preserve cash for pipeline & potential dilutive raise. Company announced "significant expense reductions" post-Angelman.
Short Interest — context
RARE — 9%
9%

Short interest moderate: bears are positioned but not extreme. UX111 approval could trigger short-covering rally worth +8–12% on top of fundamental re-rating. Note: no insider buying reported in 12M window; several 10b5-1 sales by executives (aggregate <$3M — routine, not a red flag on its own).

$Financial analysis — FY 2023–2026E
Total revenue 2025A
$673M
+20% YoY
Cash Q2-26
$436M
~4–5 quarters runway at current burn
Q2-26 rev (record)
$214M
Highest quarterly in company history
Net loss Q2-26
−$92M
Improving (vs −$115M Q2-25)
Item ($M)FY2023FY2024FY2025Q2-26 (LTM)Guidance 2026
Total revenue434560673~760730–780
Crysvita328410481~510500–520
Dojolvi718896~100100–110
Net loss−410−440−395~−380−350 to −370
Cash & equivalents (EoP)620710540436~300–350
Royalty liabilities8001,0501,1801,2001,200
Note: revenue figures per company press releases; net loss and cash approximations from 10-Q. Royalty liabilities are non-recourse financing tied to Crysvita ex-US royalty streams (Kyowa Kirin partnership), effective rates 5.5–9.2%.
Quarterly dynamics — last 5 quarters
MetricQ2 2025Q3 2025Q4 2025Q1 2026Q2 2026
Revenue ($M)159180175190214
Rev growth YoY %+18%+22%+18%+28%+35%
Net loss ($M)−115−105−95−100−92
End-of-period cash ($M)620590540500436
Financial position and sustainability
Cash runway at current burn
~5 quarters
Crysvita as % of revenue
~72%
Royalty liab / Cash coverage
$436M/$1,200M
account_tree

Business model — Ultragenyx Pharmaceutical Inc.

Rare-disease commercial + gene-therapy pipeline platform
Founded 2010 in Novato, CA. Focus on ultra-rare metabolic and genetic diseases with limited commercial competition. Four commercial products (Crysvita, Dojolvi, Mepsevii, Evkeeza) generating ~$730M annualized revenue growing 15–20% YoY. Broad Phase-3 pipeline in gene therapy (UX111, DTX401, UX701) and biologics (setrusumab under reassessment) — but 2 of the closest binary catalysts (setrusumab Orbit, GTX-102 Aspire) missed primary endpoints in the last 9 months. Strategic partnership with Kyowa Kirin on Crysvita ex-US (economic split, capped royalty liabilities). Following the September 2026 Angelman failure, management announced "significant expense reductions" and pipeline reprioritization.

Crysvita (burosumab) ~$500–520M FY26E (72% rev) 🟢 ramping X-linked hypophosphatemia + tumor-induced osteomalacia. Partnered with Kyowa Kirin ex-US. Growth +17% in 2025. Concentration risk = single-product dependency. Latin America order patterns volatile. Dojolvi (triheptanoin) ~$100–110M FY26E (15% rev) 🟢 stable growth Long-chain fatty acid oxidation disorders. +9% growth 2025. Slower but sticky orphan market. Small patient population capped upside; steady margin contributor. Mepsevii + Evkeeza ~$70M FY26E (10% rev) 🟡 mature Mepsevii (MPS VII) mature; Evkeeza (evinacumab in HoFH) small ramp. Combined not driving valuation; adds product diversification but limited growth optionality. UX111 (Sanfilippo A GT) Pipeline · PDUFA 2026-09-19 🟡 binary event T-3d AAV gene therapy for MPS IIIA. Second review cycle after facility CRL. Potential $200–400M peak. Approval = orphan launch + re-rating catalyst. Rejection = pipeline damage compounds. Setrusumab (UX143) Under reassessment 🔴 primary miss + class action Osteogenesis Imperfecta. Phase-3 Orbit/Cosmic missed primary (fracture reduction) Dec-2025 but BMD improved. Class action filed. Path forward unclear; company evaluating composite endpoint filings. Other Phase-3 assets Pipeline · 2027–2028 🟡 development DTX401 (GSDIa gene therapy), UX701 (Wilson disease gene therapy). Data readouts late 2027–2028. Multiple shots on goal but funding at risk if UX111 rejected.

gavel

Legal, regulatory and risk analysis

UX111 PDUFA — binary in 3 trading days
Critical
FDA decision 2026-09-19 (second cycle post-facility CRL). Approval = +50/+80% pop; rejection = another 30–40% leg down. Everything else in the thesis is subordinate to this single event.
Setrusumab class action + reprocessing
High
Bailey v. Ultragenyx (N.D. Cal.). Lead plaintiff deadline passed (Apr-6-2026). Discovery drags legal expense. Program itself may still salvage a BMD/composite-endpoint filing but timeline is 12–18 months.
Royalty liability overhang
High
$1.2B in non-recourse royalty debt (effective 5.5–9.2%). Locked economic drag on Crysvita ex-US cash flow. Not classical debt but reduces equity value materially; PV ~$800–900M.
Crysvita concentration (~72% of rev)
Moderate
Single-product dependency. Patent expiration >2030 but any manufacturing issue or KKC dispute would cascade. Latam ordering volatility already flagged in guidance.
Cash runway + dilution risk
Moderate
~5 quarters at current burn. Management committed to cost cuts post-Angelman. If UX111 rejected, ATM/equity raise probable within 6–9 months → 5–15% additional dilution.
Commercial revenue base & growth
Positive
Q2-26 record revenue $214M, +35% YoY. Crysvita +17%, Dojolvi +9%. Commercial franchise provides the SotP floor and prevents pure going-concern narrative.
Orphan drug pricing + rare-disease tailwind
Positive
Ultra-rare indications preserve premium pricing and limited competition. Regulatory environment favorable to gene therapies. Peer M&A activity provides optionality (BMRN, ALNY as strategic acquirers historically active).
Multi-asset pipeline optionality
Positive
Even after setrusumab and GTX-102 setbacks, RARE retains 4 late-stage programs (UX111, DTX401, UX701, setrusumab reassessment). Diversified vs single-asset binary bets — no single failure is terminal.
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SWOT analysis

Strengths
  • +4 commercial products generating $730M+ annualized revenue growing 15–20%
  • +Q2-26 record quarterly revenue $214M; commercial base intact despite pipeline setbacks
  • +Multiple late-stage pipeline assets in gene therapy (UX111, DTX401, UX701)
  • +Kyowa Kirin partnership on Crysvita ex-US caps commercial risk
  • +Orphan-drug pricing power in ultra-rare indications
Weaknesses
  • −Two consecutive Phase-3 primary-endpoint failures in 9 months (setrusumab, GTX-102)
  • −$1.2B non-recourse royalty liabilities reduce economic equity value
  • −Cash burn ~$97M/qtr; runway ~5 quarters requires disciplined execution
  • −72% revenue concentration on Crysvita
  • −Zero buyback; no history of shareholder return; management credibility damaged
Opportunities
  • →UX111 approval Sep-19 unlocks +50/+80% re-rating and Sanfilippo A orphan franchise
  • →Peer P/S at 3–10x vs RARE 1.8x — re-rating room even without new catalysts
  • →Setrusumab reprocessing on BMD/composite endpoint could salvage the program
  • →M&A optionality: BMRN, ALNY historically active acquirers in the space
  • →Cost-cut plan announced post-Angelman may extend runway meaningfully
Threats
  • !UX111 second CRL would compound sell-off and shift narrative to going concern
  • !Class action discovery may surface further disclosure issues on setrusumab
  • !Dilutive equity raise probable within 6–9 months if UX111 rejected
  • !Kyowa Kirin partnership renegotiation risk if commercial underperforms
  • !Sell-side downgrades continued: Morgan Stanley cut to Equal Weight Sep-3; further cuts possible
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Summary by assessment area

⚠️ Financial risk — Moderate/High
  • Cash $436M vs quarterly burn ~$97M = ~5 quarters runway
  • Royalty liabilities $1.2B reduce economic equity value
  • Commercial base $730M growing 15–20% provides revenue floor
  • Dilutive raise probable if UX111 rejected
🚨 Regulatory/legal risk — High
  • UX111 PDUFA Sep-19 (binary)
  • Active securities class action on setrusumab
  • Two Phase-3 primary-endpoint failures in 9 months
  • Management credibility questioned by sell-side
✓ Risk/reward — Favorable asymmetry
  • Downside to SotP floor ~$10–11 (−20/−25%)
  • Base FV $17 (+25%); consensus PT $28 (+106%)
  • Ratio upside/downside ~3–4x — passes ASYMMETRY gate
  • Position sizing must reflect binary nature (T-3 days)
Sources & Disclaimer

Sources: Ultragenyx Q2-2026 earnings release & press releases (ir.ultragenyx.com), 10-Q filings via SEC EDGAR, Yahoo Finance, Robinhood, TMX Money, StockAnalysis, Kessler Topaz Meltzer & Check LLP class action notice, Morgan Stanley/Cantor Fitzgerald/Wedbush/Barclays/Citi analyst reports (Sep-2026), fffinstill peer database. Market data — last verified close 2026-09-15 (T-1): RARE $13.61, market cap ~$1.34B, 52W range $13.81–$39.89, shares outstanding 98,588,873. Short interest ~9% (approx). Peer P/S multiples per Simply Wall St and StockAnalysis. Report as of 2026-09-16. ⚠️ This document is for informational purposes only and does not constitute financial or investment advice.